Publications

1.          Hunter, C.A., H. Koc, and E.C. Koc, c-Src kinase impairs the expression of mitochondrial OXPHOS complexes in liver cancer. Cell Signal, 2020. 72: p. 109651.

2.          Koc, E.C., J.L. Miller-Lee, and H. Koc, Fyn kinase regulates translation in mammalian mitochondria. Biochim Biophys Acta, 2017. 1861(3): p. 533-540.

3.          Feng, X., et al., An LC-MS/MS method for the determination of digitoxigenin in skin samples and its application to skin permeation and metabolic stability studies. J Pharm Biomed Anal, 2017. 138: p. 378-385.

4.          Rockich-Winston, N., et al., First semester experiences of using the flipped classroom model in a new pharmacy school. Pharmacy Education, 2015. 15(1): p. 120-123.

5.          Koc, E.C., et al., Impaired mitochondrial protein synthesis in head and neck squamous cell carcinoma. Mitochondrion, 2015. 24: p. 113-21.

6.          Han, M.J., E.C. Koc, and H. Koc, Post-translational modification and mitochondrial relocalization of histone H3 during apoptosis induced by staurosporine. Biochem Biophys Res Commun, 2014. 450(1): p. 802-7.

7.          Cordek, D.G., et al., Expanding the proteome of an RNA virus by phosphorylation of an intrinsically disordered viral protein. J Biol Chem, 2014. 289(35): p. 24397-416.

8.          Koc, E.C. and H. Koc, Mechanism and regulation of protein synthesis in mammalian mitochondria, in Translation in Mitochondria and Other Organelles. 2013, Springer. p. 29-53.

9.          Koc, E.C., et al., Identification and characterization of CHCHD1, AURKAIP1, and CRIF1 as new members of the mammalian mitochondrial ribosome. Front Physiol, 2013. 4: p. 183.

10.        Koc, E.C. and H. Koc, Regulation of mammalian mitochondrial translation by post-translational modifications. Biochim Biophys Acta, 2012. 1819(9-10): p. 1055-66.

11.        Haque, M.E., et al., Contacts between mammalian mitochondrial translational initiation factor 3 and ribosomal proteins in the small subunit. Biochim Biophys Acta, 2011. 1814(12): p. 1779-84.

12.        Han, M.J., et al., Purification of human mitochondrial ribosomal L7/L12 stalk proteins and reconstitution of functional hybrid ribosomes in Escherichia coli. Protein Expr Purif, 2011. 78(1): p. 48-54.

13.        Begemann, P., et al., Identification and characterization of 2′-deoxyadenosine adducts formed by isoprene monoepoxides in vitro. Chem Res Toxicol, 2011. 24(7): p. 1048-61.

14.        Yang, Y., et al., NAD+-dependent deacetylase SIRT3 regulates mitochondrial protein synthesis by deacetylation of the ribosomal protein MRPL10. J Biol Chem, 2010. 285(10): p. 7417-29.

15.        Manna, D., et al., Endocytic Rab proteins are required for hepatitis C virus replication complex formation. Virology, 2010. 398(1): p. 21-37.

16.        Haque, M.E., et al., Properties of the C-terminal tail of human mitochondrial inner membrane protein Oxa1L and its interactions with mammalian mitochondrial ribosomes. J Biol Chem, 2010. 285(36): p. 28353-62.

17.        Cimen, H., et al., Regulation of succinate dehydrogenase activity by SIRT3 in mammalian mitochondria. Biochemistry, 2010. 49(2): p. 304-11.

18.        Soung, G.Y., et al., Comprehensive analysis of phosphorylated proteins of Escherichia coli ribosomes. J Proteome Res, 2009. 8(7): p. 3390-402.

19.        Miller, J.L., et al., Phosphorylated proteins of the mammalian mitochondrial ribosome: implications in protein synthesis. J Proteome Res, 2009. 8(10): p. 4789-98.

20.        Miller, J.L., H. Koc, and E.C. Koc, Identification of phosphorylation sites in mammalian mitochondrial ribosomal protein DAP3. Protein Sci, 2008. 17(2): p. 251-60.

21.        Sato, S., et al., Expression analysis of extracellular proteins from Phanerochaete chrysosporium grown on different liquid and solid substrates. Microbiology, 2007. 153(Pt 9): p. 3023-33.

22.        Perederina, A., et al., Specific binding of a Pop6/Pop7 heterodimer to the P3 stem of the yeast RNase MRP and RNase P RNAs. RNA, 2007. 13(10): p. 1648-55.

23.        Moura, A.A., et al., A comprehensive proteomic analysis of the accessory sex gland fluid from mature Holstein bulls. Anim Reprod Sci, 2007. 98(3-4): p. 169-88.

24.        Liu, F., H. Koc, and M. Tien, Proteomic Analysis of Extracellular Enzymes Produced by Wood-Degrading Fungi, in Manual of Environmental Microbiology, Third Edition. 2007, American Society of Microbiology. p. 1089-1096.

25.        Moura, A.A., et al., Identification of proteins in the accessory sex gland fluid associated with fertility indexes of dairy bulls: a proteomic approach. J Androl, 2006. 27(2): p. 201-11.

26.        Moura, A.A., et al., Proteins of the cauda epididymal fluid associated with fertility of mature dairy bulls. J Androl, 2006. 27(4): p. 534-41.

27.        Rusyn, I., et al., Effects of ethylene oxide and ethylene inhalation on DNA adducts, apurinic/apyrimidinic sites and expression of base excision DNA repair genes in rat brain, spleen, and liver. DNA Repair (Amst), 2005. 4(10): p. 1099-110.

28.        Abbas, A., et al., Fungal degradation of wood: initial proteomic analysis of extracellular proteins of Phanerochaete chrysosporium grown on oak substrate. Curr Genet, 2005. 47(1): p. 49-56.

29.        Ham, A.J., et al., New immunoaffinity-LC-MS/MS methodology reveals that Aag null mice are deficient in their ability to clear 1,N6-etheno-deoxyadenosine DNA lesions from lung and liver in vivo. DNA Repair (Amst), 2004. 3(3): p. 257-65.

30.        Begemann, P., et al., Synthesis, characterization, and identification of N7-guanine adducts of isoprene monoepoxides in vitro. Chem Res Toxicol, 2004. 17(7): p. 929-36.

31.        Jayaraj, K., et al., Synthesis and characterization of peptides containing a cyclic Val adduct of diepoxybutane, a possible biomarker of human exposure to butadiene. Chem Res Toxicol, 2003. 16(5): p. 637-43.

32.        Swenberg, J.A., et al., Methods for measuring DNA adducts and abasic sites II: methods for measurement of DNA adducts. Curr Protoc Toxicol, 2002. Chapter 3: p. Unit3 9.

33.        Swenberg, J.A., et al., Linking pharmacokinetics and biomarker data to mechanism of action in risk assessment. Human and Ecological Risk Assessment, 2002. 8(6): p. 1315-1338.

34.        Richardson, F.C., et al., Quantification of 2′-fluoro-2′-deoxyuridine and 2′-fluoro-2′-deoxycytidine in DNA and RNA isolated from rats and woodchucks using LC/MS/MS. Chem Res Toxicol, 2002. 15(7): p. 922-6.

35.        Morinello, E.J., et al., Differential induction of N(2),3-ethenoguanine in rat brain and liver after exposure to vinyl chloride. Cancer Res, 2002. 62(18): p. 5183-8.

36.        Koc, H. and J.A. Swenberg, Applications of mass spectrometry for quantitation of DNA adducts. J Chromatogr B Analyt Technol Biomed Life Sci, 2002. 778(1-2): p. 323-43.

37.        Koc, H., et al., Quantitation of choline and its metabolites in tissues and foods by liquid chromatography/electrospray ionization-isotope dilution mass spectrometry. Anal Chem, 2002. 74(18): p. 4734-40.

38.        Swenberg, J.A., et al., Using DNA and hemoglobin adducts to improve the risk assessment of butadiene. Chem Biol Interact, 2001. 135-136: p. 387-403.

39.        Koc, E.C., et al., A new face on apoptosis: death-associated protein 3 and PDCD9 are mitochondrial ribosomal proteins. FEBS letters, 2001. 492(1): p. 166-170.

40.        Koc, E.C., et al., Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci, 2001. 10(3): p. 471-81.

41.        Cavdar Koc, E., et al., A new face on apoptosis: death-associated protein 3 and PDCD9 are mitochondrial ribosomal proteins. FEBS Lett, 2001. 492(1-2): p. 166-70.

42.        Swenberg, J.A., et al., DNA adducts: effects of low exposure to ethylene oxide, vinyl chloride and butadiene. Mutat Res, 2000. 464(1): p. 77-86.

43.        Swenberg, J.A., et al., Biomarkers of Exposure and Effect. Toxicologic Pathology, 2000. 28(6): p. 875-876.

44.        Koc, E.C., et al., A proteomics approach to the identification of mammalian mitochondrial small subunit ribosomal proteins. J Biol Chem, 2000. 275(42): p. 32585-91.

45.        Ham, A.J., et al., 4-Hydroxy-2-nonenal and ethyl linoleate form N(2),3-ethenoguanine under peroxidizing conditions. Chem Res Toxicol, 2000. 13(12): p. 1243-50.

46.        Koc, H., et al., Molecular dosimetry of N-7 guanine adduct formation in mice and rats exposed to 1,3-butadiene. Chem Res Toxicol, 1999. 12(7): p. 566-74.

47.        Shojaee, S., et al., Bioremediation by Cell Suspensions. International Journal of Environmentally Conscious Design and Manufacturing, 1998. 7: p. 1-6.

48.        Icli, S., et al., Nmr, Absorption and Fluorescence Parameters of Azlactones. Spectroscopy Letters, 1994. 27(9): p. 1115-1128.