{"id":28,"date":"2021-03-16T17:10:06","date_gmt":"2021-03-16T17:10:06","guid":{"rendered":"https:\/\/mupages.marshall.edu\/sites\/kochlab\/?page_id=28"},"modified":"2021-03-17T14:17:16","modified_gmt":"2021-03-17T14:17:16","slug":"publications","status":"publish","type":"page","link":"https:\/\/mupages.marshall.edu\/kochlab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n

1.\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Hunter, C.A., H. Koc, and E.C. Koc, c-Src kinase impairs the expression of mitochondrial OXPHOS complexes in liver cancer.<\/em> Cell Signal, 2020. 72<\/strong>: p. 109651.<\/p>\n\n\n\n

2.          Koc, E.C., J.L. Miller-Lee, and H. Koc, Fyn kinase regulates translation in mammalian mitochondria.<\/em> Biochim Biophys Acta, 2017. 1861<\/strong>(3): p. 533-540.<\/p>\n\n\n\n

3.          Feng, X., et al., An LC-MS\/MS method for the determination of digitoxigenin in skin samples and its application to skin permeation and metabolic stability studies.<\/em> J Pharm Biomed Anal, 2017. 138<\/strong>: p. 378-385.<\/p>\n\n\n\n

4.          Rockich-Winston, N., et al., First semester experiences of using the flipped classroom model in a new pharmacy school.<\/em> Pharmacy Education, 2015. 15<\/strong>(1): p. 120-123.<\/p>\n\n\n\n

5.          Koc, E.C., et al., Impaired mitochondrial protein synthesis in head and neck squamous cell carcinoma.<\/em> Mitochondrion, 2015. 24<\/strong>: p. 113-21.<\/p>\n\n\n\n

6.          Han, M.J., E.C. Koc, and H. Koc, Post-translational modification and mitochondrial relocalization of histone H3 during apoptosis induced by staurosporine.<\/em> Biochem Biophys Res Commun, 2014. 450<\/strong>(1): p. 802-7.<\/p>\n\n\n\n

7.          Cordek, D.G., et al., Expanding the proteome of an RNA virus by phosphorylation of an intrinsically disordered viral protein.<\/em> J Biol Chem, 2014. 289<\/strong>(35): p. 24397-416.<\/p>\n\n\n\n

8.          Koc, E.C. and H. Koc, Mechanism and regulation of protein synthesis in mammalian mitochondria<\/em>, in Translation in Mitochondria and Other Organelles<\/em>. 2013, Springer. p. 29-53.<\/p>\n\n\n\n

9.          Koc, E.C., et al., Identification and characterization of CHCHD1, AURKAIP1, and CRIF1 as new members of the mammalian mitochondrial ribosome.<\/em> Front Physiol, 2013. 4<\/strong>: p. 183.<\/p>\n\n\n\n

10.        Koc, E.C. and H. Koc, Regulation of mammalian mitochondrial translation by post-translational modifications.<\/em> Biochim Biophys Acta, 2012. 1819<\/strong>(9-10): p. 1055-66.<\/p>\n\n\n\n

11.        Haque, M.E., et al., Contacts between mammalian mitochondrial translational initiation factor 3 and ribosomal proteins in the small subunit.<\/em> Biochim Biophys Acta, 2011. 1814<\/strong>(12): p. 1779-84.<\/p>\n\n\n\n

12.        Han, M.J., et al., Purification of human mitochondrial ribosomal L7\/L12 stalk proteins and reconstitution of functional hybrid ribosomes in Escherichia coli.<\/em> Protein Expr Purif, 2011. 78<\/strong>(1): p. 48-54.<\/p>\n\n\n\n

13.        Begemann, P., et al., Identification and characterization of 2′-deoxyadenosine adducts formed by isoprene monoepoxides in vitro.<\/em> Chem Res Toxicol, 2011. 24<\/strong>(7): p. 1048-61.<\/p>\n\n\n\n

14.        Yang, Y., et al., NAD+-dependent deacetylase SIRT3 regulates mitochondrial protein synthesis by deacetylation of the ribosomal protein MRPL10.<\/em> J Biol Chem, 2010. 285<\/strong>(10): p. 7417-29.<\/p>\n\n\n\n

15.        Manna, D., et al., Endocytic Rab proteins are required for hepatitis C virus replication complex formation.<\/em> Virology, 2010. 398<\/strong>(1): p. 21-37.<\/p>\n\n\n\n

16.        Haque, M.E., et al., Properties of the C-terminal tail of human mitochondrial inner membrane protein Oxa1L and its interactions with mammalian mitochondrial ribosomes.<\/em> J Biol Chem, 2010. 285<\/strong>(36): p. 28353-62.<\/p>\n\n\n\n

17.        Cimen, H., et al., Regulation of succinate dehydrogenase activity by SIRT3 in mammalian mitochondria.<\/em> Biochemistry, 2010. 49<\/strong>(2): p. 304-11.<\/p>\n\n\n\n

18.        Soung, G.Y., et al., Comprehensive analysis of phosphorylated proteins of Escherichia coli ribosomes.<\/em> J Proteome Res, 2009. 8<\/strong>(7): p. 3390-402.<\/p>\n\n\n\n

19.        Miller, J.L., et al., Phosphorylated proteins of the mammalian mitochondrial ribosome: implications in protein synthesis.<\/em> J Proteome Res, 2009. 8<\/strong>(10): p. 4789-98.<\/p>\n\n\n\n

20.        Miller, J.L., H. Koc, and E.C. Koc, Identification of phosphorylation sites in mammalian mitochondrial ribosomal protein DAP3.<\/em> Protein Sci, 2008. 17<\/strong>(2): p. 251-60.<\/p>\n\n\n\n

21.        Sato, S., et al., Expression analysis of extracellular proteins from Phanerochaete chrysosporium grown on different liquid and solid substrates.<\/em> Microbiology, 2007. 153<\/strong>(Pt 9): p. 3023-33.<\/p>\n\n\n\n

22.        Perederina, A., et al., Specific binding of a Pop6\/Pop7 heterodimer to the P3 stem of the yeast RNase MRP and RNase P RNAs.<\/em> RNA, 2007. 13<\/strong>(10): p. 1648-55.<\/p>\n\n\n\n

23.        Moura, A.A., et al., A comprehensive proteomic analysis of the accessory sex gland fluid from mature Holstein bulls.<\/em> Anim Reprod Sci, 2007. 98<\/strong>(3-4): p. 169-88.<\/p>\n\n\n\n

24.        Liu, F., H. Koc, and M. Tien, Proteomic Analysis of Extracellular Enzymes Produced by Wood-Degrading Fungi<\/em>, in Manual of Environmental Microbiology, Third Edition<\/em>. 2007, American Society of Microbiology. p. 1089-1096.<\/p>\n\n\n\n

25.        Moura, A.A., et al., Identification of proteins in the accessory sex gland fluid associated with fertility indexes of dairy bulls: a proteomic approach.<\/em> J Androl, 2006. 27<\/strong>(2): p. 201-11.<\/p>\n\n\n\n

26.        Moura, A.A., et al., Proteins of the cauda epididymal fluid associated with fertility of mature dairy bulls.<\/em> J Androl, 2006. 27<\/strong>(4): p. 534-41.<\/p>\n\n\n\n

27.        Rusyn, I., et al., Effects of ethylene oxide and ethylene inhalation on DNA adducts, apurinic\/apyrimidinic sites and expression of base excision DNA repair genes in rat brain, spleen, and liver.<\/em> DNA Repair (Amst), 2005. 4<\/strong>(10): p. 1099-110.<\/p>\n\n\n\n

28.        Abbas, A., et al., Fungal degradation of wood: initial proteomic analysis of extracellular proteins of Phanerochaete chrysosporium grown on oak substrate.<\/em> Curr Genet, 2005. 47<\/strong>(1): p. 49-56.<\/p>\n\n\n\n

29.        Ham, A.J., et al., New immunoaffinity-LC-MS\/MS methodology reveals that Aag null mice are deficient in their ability to clear 1,N6-etheno-deoxyadenosine DNA lesions from lung and liver in vivo.<\/em> DNA Repair (Amst), 2004. 3<\/strong>(3): p. 257-65.<\/p>\n\n\n\n

30.        Begemann, P., et al., Synthesis, characterization, and identification of N7-guanine adducts of isoprene monoepoxides in vitro.<\/em> Chem Res Toxicol, 2004. 17<\/strong>(7): p. 929-36.<\/p>\n\n\n\n

31.        Jayaraj, K., et al., Synthesis and characterization of peptides containing a cyclic Val adduct of diepoxybutane, a possible biomarker of human exposure to butadiene.<\/em> Chem Res Toxicol, 2003. 16<\/strong>(5): p. 637-43.<\/p>\n\n\n\n

32.        Swenberg, J.A., et al., Methods for measuring DNA adducts and abasic sites II: methods for measurement of DNA adducts.<\/em> Curr Protoc Toxicol, 2002. Chapter 3<\/strong>: p. Unit3 9.<\/p>\n\n\n\n

33.        Swenberg, J.A., et al., Linking pharmacokinetics and biomarker data to mechanism of action in risk assessment.<\/em> Human and Ecological Risk Assessment, 2002. 8<\/strong>(6): p. 1315-1338.<\/p>\n\n\n\n

34.        Richardson, F.C., et al., Quantification of 2′-fluoro-2′-deoxyuridine and 2′-fluoro-2′-deoxycytidine in DNA and RNA isolated from rats and woodchucks using LC\/MS\/MS.<\/em> Chem Res Toxicol, 2002. 15<\/strong>(7): p. 922-6.<\/p>\n\n\n\n

35.        Morinello, E.J., et al., Differential induction of N(2),3-ethenoguanine in rat brain and liver after exposure to vinyl chloride.<\/em> Cancer Res, 2002. 62<\/strong>(18): p. 5183-8.<\/p>\n\n\n\n

36.        Koc, H. and J.A. Swenberg, Applications of mass spectrometry for quantitation of DNA adducts.<\/em> J Chromatogr B Analyt Technol Biomed Life Sci, 2002. 778<\/strong>(1-2): p. 323-43.<\/p>\n\n\n\n

37.        Koc, H., et al., Quantitation of choline and its metabolites in tissues and foods by liquid chromatography\/electrospray ionization-isotope dilution mass spectrometry.<\/em> Anal Chem, 2002. 74<\/strong>(18): p. 4734-40.<\/p>\n\n\n\n

38.        Swenberg, J.A., et al., Using DNA and hemoglobin adducts to improve the risk assessment of butadiene.<\/em> Chem Biol Interact, 2001. 135-136<\/strong>: p. 387-403.<\/p>\n\n\n\n

39.        Koc, E.C., et al., A new face on apoptosis: death-associated protein 3 and PDCD9 are mitochondrial ribosomal proteins.<\/em> FEBS letters, 2001. 492<\/strong>(1): p. 166-170.<\/p>\n\n\n\n

40.        Koc, E.C., et al., Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach.<\/em> Protein Sci, 2001. 10<\/strong>(3): p. 471-81.<\/p>\n\n\n\n

41.        Cavdar Koc, E., et al., A new face on apoptosis: death-associated protein 3 and PDCD9 are mitochondrial ribosomal proteins.<\/em> FEBS Lett, 2001. 492<\/strong>(1-2): p. 166-70.<\/p>\n\n\n\n

42.        Swenberg, J.A., et al., DNA adducts: effects of low exposure to ethylene oxide, vinyl chloride and butadiene.<\/em> Mutat Res, 2000. 464<\/strong>(1): p. 77-86.<\/p>\n\n\n\n

43.        Swenberg, J.A., et al., Biomarkers of Exposure and Effect.<\/em> Toxicologic Pathology, 2000. 28<\/strong>(6): p. 875-876.<\/p>\n\n\n\n

44.        Koc, E.C., et al., A proteomics approach to the identification of mammalian mitochondrial small subunit ribosomal proteins.<\/em> J Biol Chem, 2000. 275<\/strong>(42): p. 32585-91.<\/p>\n\n\n\n

45.        Ham, A.J., et al., 4-Hydroxy-2-nonenal and ethyl linoleate form N(2),3-ethenoguanine under peroxidizing conditions.<\/em> Chem Res Toxicol, 2000. 13<\/strong>(12): p. 1243-50.<\/p>\n\n\n\n

46.        Koc, H., et al., Molecular dosimetry of N-7 guanine adduct formation in mice and rats exposed to 1,3-butadiene.<\/em> Chem Res Toxicol, 1999. 12<\/strong>(7): p. 566-74.<\/p>\n\n\n\n

47.        Shojaee, S., et al., Bioremediation by Cell Suspensions.<\/em> International Journal of Environmentally Conscious Design and Manufacturing, 1998. 7<\/strong>: p. 1-6.<\/p>\n\n\n\n

48.        Icli, S., et al., Nmr, Absorption and Fluorescence Parameters of Azlactones.<\/em> Spectroscopy Letters, 1994. 27<\/strong>(9): p. 1115-1128.<\/p>\n","protected":false},"excerpt":{"rendered":"

1.\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Hunter, C.A., H. Koc, and E.C. Koc, c-Src kinase impairs the expression of mitochondrial OXPHOS complexes in liver cancer. Cell Signal, 2020. 72: p. 109651. 2.          Koc, E.C., J.L. Miller-Lee, and H. Koc, Fyn kinase regulates translation in mammalian mitochondria. Biochim Biophys Acta, 2017. 1861(3): p. 533-540. 3.          Feng, X., et al., An LC-MS\/MS […]<\/p>\n","protected":false},"author":68,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"class_list":["post-28","page","type-page","status-publish","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/mupages.marshall.edu\/kochlab\/wp-json\/wp\/v2\/pages\/28","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/mupages.marshall.edu\/kochlab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/mupages.marshall.edu\/kochlab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/mupages.marshall.edu\/kochlab\/wp-json\/wp\/v2\/users\/68"}],"replies":[{"embeddable":true,"href":"https:\/\/mupages.marshall.edu\/kochlab\/wp-json\/wp\/v2\/comments?post=28"}],"version-history":[{"count":2,"href":"https:\/\/mupages.marshall.edu\/kochlab\/wp-json\/wp\/v2\/pages\/28\/revisions"}],"predecessor-version":[{"id":49,"href":"https:\/\/mupages.marshall.edu\/kochlab\/wp-json\/wp\/v2\/pages\/28\/revisions\/49"}],"wp:attachment":[{"href":"https:\/\/mupages.marshall.edu\/kochlab\/wp-json\/wp\/v2\/media?parent=28"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}